Acipenser schypa Bonnaterre, 1788 accepted as Acipenser nudiventris Lovetsky, 1828 (original description)
Alopias vulpinus (Bonnaterre, 1788) (additional source)
Balistes cinereus Bonnaterre, 1788 accepted as Rhinecanthus cinereus (Bonnaterre, 1788) (original description)
Chaetodon lutescens Bonnaterre, 1788 accepted as Pomacanthus arcuatus (Linnaeus, 1758) (original description)
Cottus brodamus Bonnaterre, 1788 accepted as Agonus cataphractus (Linnaeus, 1758) (original description)
Cottus indicus Bonnaterre, 1788 accepted as Aspidophoroides monopterygius (Bloch, 1786) (original description)
Cyclopterus bimaculatus Bonnaterre, 1788 accepted as Diplecogaster bimaculata (Bonnaterre, 1788) (original description)
Cyclopterus lepadogaster Bonnaterre, 1788 accepted as Lepadogaster lepadogaster (Bonnaterre, 1788) (original description)
Cyclopterus purpureus Bonnaterre, 1788 accepted as Lepadogaster purpurea (Bonnaterre, 1788) (original description)
Dalatias licha (Bonnaterre, 1788) (additional source)
Gadus torsk Bonnaterre, 1788 accepted as Brosme brosme (Ascanius, 1772) (original description)
Hexanchus griseus (Bonnaterre, 1788) (additional source)
Labrus albovittatus Bonnaterre, 1788 accepted as Stethojulis albovittata (Bonnaterre, 1788) (original description)
Labrus ballan Bonnaterre, 1788 accepted as Labrus bergylta Ascanius, 1767 (original description)
Labrus cinereus Bonnaterre, 1788 accepted as Symphodus cinereus (Bonnaterre, 1788) (original description)
Labrus coeruleovittatus Bonnaterre, 1788 accepted as Symphodus mediterraneus (Linnaeus, 1758) (original description)
Labrus comber Bonnaterre, 1788 accepted as Labrus bergylta Ascanius, 1767 (original description)
Labrus gibbosus Bonnaterre, 1788 accepted as Symphodus melops (Linnaeus, 1758) (original description)
Labrus goldsinny Bonnaterre, 1788 accepted as Symphodus melops (Linnaeus, 1758) (original description)
Labrus lineatus Bonnaterre, 1788 accepted as Labrus mixtus Linnaeus, 1758 (original description)
Labrus reticulatus Bonnaterre, 1788 accepted as Symphodus ocellatus (Linnaeus, 1758) (original description)
Labrus serpentinus Bonnaterre, 1788 accepted as Symphodus mediterraneus (Linnaeus, 1758) (original description)
Labrus trimaculatus Bonnaterre, 1788 accepted as Labrus mixtus Linnaeus, 1758 (original description)
Lamna nasus (Bonnaterre, 1788) (additional source)
Lampetra Bonnaterre, 1788 (original description)
Lepadogaster lepadogaster (Bonnaterre, 1788) (additional source)
Lepidopus argenteus Bonnaterre, 1788 accepted as Lepidopus caudatus (Euphrasen, 1788) (original description)
Leptocephalus lineatus Bonnaterre, 1788 accepted as Conger conger (Linnaeus, 1758) (original description)
Muraena nigricans Bonnaterre, 1788 accepted as Enchelycore nigricans (Bonnaterre, 1788) (original description)
Phrynorhombus regius (Bonnaterre, 1788) accepted as Zeugopterus regius (Bonnaterre, 1788) (additional source)
Pleuronectes limandula Bonnaterre, 1788 accepted as Limanda limanda (Linnaeus, 1758) (original description)
Pleuronectes regius Bonnaterre, 1788 accepted as Zeugopterus regius (Bonnaterre, 1788) (original description)
Raia mobular Bonnaterre, 1788 accepted as Mobula mobular (Bonnaterre, 1788) (original description)
Salmo albus Bonnaterre, 1788 accepted as Salmo trutta Linnaeus, 1758 (original description)
Salmo nefasch Bonnaterre, 1788 accepted as Distichodus nefasch (Bonnaterre, 1788) (original description)
Salmo strom Bonnaterre, 1788 accepted as Salmo salar Linnaeus, 1758 (original description)
Salmo thymus Bonnaterre, 1788 accepted as Thymallus thymallus (Linnaeus, 1758) (original description)
Scarus viridis Bonnaterre, 1788 accepted as Sparisoma viride (Bonnaterre, 1788) (original description)
Scomber alalunga Bonnaterre, 1788 accepted as Thunnus alalunga (Bonnaterre, 1788) (original description)
Scomber albacares Bonnaterre, 1788 accepted as Thunnus albacares (Bonnaterre, 1788) (original description)
Silurus electricus Bonnaterre, 1788 accepted as Malapterurus electricus (Gmelin, 1789) (original description)
Sparus brama Bonnaterre, 1788 accepted as Brama brama (Bonnaterre, 1788) (original description)
Squalus brucus Bonnaterre, 1788 accepted as Echinorhinus brucus (Bonnaterre, 1788) (original description)
Squalus cirratus Bonnaterre, 1788 accepted as Ginglymostoma cirratum (Bonnaterre, 1788) (original description)
Squalus griseus Bonnaterre, 1788 accepted as Hexanchus griseus (Bonnaterre, 1788) (original description)
Squalus isabella Bonnaterre, 1788 accepted as Cephaloscyllium isabella (Bonnaterre, 1788) (original description)
Squalus licha Bonnaterre, 1788 accepted as Dalatias licha (Bonnaterre, 1788) (original description)
Squalus maculatus Bonnaterre, 1788 accepted as Orectolobus maculatus (Bonnaterre, 1788) (original description)
Squalus nasus Bonnaterre, 1788 accepted as Lamna nasus (Bonnaterre, 1788) (original description)
Squalus ocellatus Bonnaterre, 1788 accepted as Hemiscyllium ocellatum (Bonnaterre, 1788) (original description)
Squalus perlo Bonnaterre, 1788 accepted as Heptranchias perlo (Bonnaterre, 1788) (original description)
Squalus squamosus Bonnaterre, 1788 accepted as Centrophorus squamosus (Bonnaterre, 1788) (original description)
Squalus vulpinus Bonnaterre, 1788 accepted as Alopias vulpinus (Bonnaterre, 1788) (original description)
Thunnus alalunga (Bonnaterre, 1788) (additional source)
Thunnus albacares (Bonnaterre, 1788) (additional source)
Trigla (Trigloporus) lastoviza Bonnaterre, 1788 represented as Trigla lastoviza Bonnaterre, 1788 accepted as Chelidonichthys lastoviza (Bonnaterre, 1788) (original description)
Trigla lastoviza Bonnaterre, 1788 accepted as Chelidonichthys lastoviza (Bonnaterre, 1788) (original description)
Zeus regius Bonnaterre, 1788 accepted as Lampris guttatus (Brünnich, 1788) (original description)