1. Species Eupomacentrus albifasciatus (Schlegel & Müller, 1839) accepted as Stegastes albifasciatus (Schlegel & Müller, 1839)
2. Species Eupomacentrus albofasciatus (Schlegel & Müller, 1839) accepted as Stegastes albifasciatus (Schlegel & Müller, 1839)
3. Species Eupomacentrus altus (Okada & Ikeda, 1937) accepted as Plectroglyphidodon altus (Okada & Ikeda, 1937) (unaccepted > superseded combination)
4. Species Eupomacentrus arcifrons (Heller & Snodgrass, 1903) accepted as Stegastes arcifrons (Heller & Snodgrass, 1903)
5. Species Eupomacentrus beebei Nichols, 1924 accepted as Stegastes beebei (Nichols, 1924)
6. Species Eupomacentrus chrysus Bean, 1906 accepted as Stegastes variabilis (Castelnau, 1855)
7. Species Eupomacentrus diencaeus Jordan & Rutter, 1897 accepted as Stegastes diencaeus (Jordan & Rutter, 1897)
8. Species Eupomacentrus emeryi Allen & Randall, 1974 accepted as Plectroglyphidodon emeryi (Allen & Randall, 1974)
9. Species Eupomacentrus fasciolatus (Ogilby, 1889) accepted as Plectroglyphidodon fasciolatus (Ogilby, 1889)
10. Species Eupomacentrus fuscus (Cuvier, 1830) accepted as Stegastes fuscus (Cuvier, 1830)
11. Species Eupomacentrus kumkum (Montrouzier, 1857) accepted as Stegastes punctatus (Quoy & Gaimard, 1825) (synonym)
12. Species Eupomacentrus leucorus (Gilbert, 1892) accepted as Stegastes leucorus (Gilbert, 1892)
13. Species Eupomacentrus leucostictus (Müller & Troschel, 1848) accepted as Stegastes leucostictus (Müller & Troschel, 1848)
14. Species Eupomacentrus lividus (Forster, 1801) accepted as Stegastes lividus (Forster, 1801)
15. Species Eupomacentrus marginatus Jenkins, 1901 accepted as Plectroglyphidodon marginatus (Jenkins, 1901)
16. Species Eupomacentrus mellis Emery & Burgess, 1974 accepted as Stegastes diencaeus (Jordan & Rutter, 1897)
17. Species Eupomacentrus nepenthe Nichols, 1921 accepted as Stegastes leucostictus (Müller & Troschel, 1848)
18. Species Eupomacentrus nigricans (Lacepède, 1802) accepted as Stegastes nigricans (Lacepède, 1802)
19. Species Eupomacentrus partitus (Poey, 1868) accepted as Stegastes partitus (Poey, 1868)
20. Species Eupomacentrus paschalis Whitley, 1929 accepted as Plectroglyphidodon fasciolatus (Ogilby, 1889)
21. Species Eupomacentrus planifrons (Cuvier, 1830) accepted as Stegastes planifrons (Cuvier, 1830)
22. Species Eupomacentrus rocasensis Emery, 1972 accepted as Stegastes rocasensis (Emery, 1972)
23. Species Eupomacentrus rubridorsalis Beebe & Hollister, 1933 accepted as Stegastes adustus (Troschel, 1865)
24. Species Eupomacentrus variabilis (Castelnau, 1855) accepted as Stegastes variabilis (Castelnau, 1855)

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