Agelas cavernosa Thiele, 1903 (original description)
Biemna humilis Thiele, 1903 accepted as Mycale (Kerasemna) humilis (Thiele, 1903) (original description)
Echinochalina Thiele, 1903 (original description)
Echinochalina (Echinochalina) Thiele, 1903 (original description)
Gelliodes hamata Thiele, 1903 accepted as Haliclona (Flagellia) hamata (Thiele, 1903) (original description)
Gelliodes porosa Thiele, 1903 (original description)
Gellius forcipatus Thiele, 1903 accepted as Haliclona (Gellius) forcipata (Thiele, 1903) (original description)
Gellius irregularis Kieschnick, 1896 accepted as Haliclona (Gellius) kieschnicki Van Soest & Hooper, 2020 (additional source)
Hamigera ternatensis Thiele, 1903 accepted as Lissodendoryx (Lissodendoryx) ternatensis (Thiele, 1903) (original description)
Hymedesmia prostrata Thiele, 1903 represented as Hymedesmia (Hymedesmia) prostrata Thiele, 1903 (original description)
Hymeraphia distincta Thiele, 1903 accepted as Clathria (Thalysias) distincta (Thiele, 1903) (original description)
Hymeraphia similis Thiele, 1903 accepted as Clathria (Microciona) similis (Thiele, 1903) (original description)
Mycale armata Thiele, 1903 accepted as Mycale (Mycale) grandis Gray, 1867 (original description)
Mycale moluccensis Thiele, 1903 represented as Mycale (Paresperella) moluccensis (Thiele, 1903) (original description)
Myxilla grata Thiele, 1903 accepted as Lissodendoryx (Lissodendoryx) grata (Thiele, 1903) (original description)
Myxilla schmidti (Ridley, 1884) accepted as Lissodendoryx (Waldoschmittia) schmidti (Ridley, 1884) (new combination reference)
Petrosia cancellata Thiele, 1903 accepted as Petrosia (Petrosia) nigricans Lindgren, 1897 (original description)
Petrosia strongylata Thiele, 1903 represented as Petrosia (Strongylophora) strongylata Thiele, 1903 (original description)
Protoschmidtia expansa Thiele, 1903 accepted as Petrosia (Petrosia) expansa (Thiele, 1903) (original description)
Protoschmidtia pulvillus Thiele, 1903 accepted as Petrosia (Petrosia) pulvilla (Thiele, 1903) (original description)
Rhabdastrella Thiele, 1903 (original description)
Rhaphidophlus cervicornis Thiele, 1903 accepted as Clathria (Thalysias) cervicornis (Thiele, 1903) (original description)
Rhaphidophlus coralliophilus Thiele, 1903 accepted as Clathria (Thalysias) coralliophila (Thiele, 1903) (original description)
Rhaphidophlus spinifer Lindgren, 1897 accepted as Clathria (Thalysias) spinifera (Lindgren, 1897) (additional source)
Tedania brevispiculata Thiele, 1903 represented as Tedania (Tedania) brevispiculata Thiele, 1903 (original description)
Tedania coralliophila Thiele, 1903 represented as Tedania (Tedania) coralliophila Thiele, 1903 (original description)
Tedania maeandrica Thiele, 1903 represented as Tedania (Tedania) maeandrica Thiele, 1903 (original description)
Tedania reticulata Thiele, 1903 represented as Tedania (Tedania) reticulata Thiele, 1903 (original description)
Tylodesma Thiele, 1903 accepted as Desmacella Schmidt, 1870 (original description)
Zottea Laubenfels, 1936 accepted as Lissodendoryx (Lissodendoryx) Topsent, 1892 (source of synonymy)

Halmahera for Acarnus wolffgangi Keller, 1889 
Halmahera for Agelas cavernosa Thiele, 1903 
Halmahera for Biemna humilis Thiele, 1903 
Halmahera for Clathria (Thalysias) coralliophila (Thiele, 1903) 
Halmahera for Clathria (Thalysias) distincta (Thiele, 1903) 
Halmahera for Gelliodes hamata Thiele, 1903 
Halmahera for Gelliodes porosa Thiele, 1903 
Halmahera for Gellius forcipatus Thiele, 1903 
Halmahera for Haliclona (Gellius) forcipata (Thiele, 1903) 
Halmahera for Hamigera ternatensis Thiele, 1903 
Halmahera for Hymedesmia prostrata Thiele, 1903 
Halmahera for Mycale armata Thiele, 1903 
Halmahera for Mycale moluccensis Thiele, 1903 
Halmahera for Myxilla grata Thiele, 1903 
Halmahera for Myxilla schmidti (Ridley, 1884) 
Halmahera for Petrosia cancellata Thiele, 1903 
Halmahera for Petrosia strongylata Thiele, 1903 
Halmahera for Protoschmidtia expansa Thiele, 1903 
Halmahera for Protoschmidtia pulvillus Thiele, 1903 
Halmahera for Rhaphidophlus cervicornis Thiele, 1903 
Halmahera for Rhaphidophlus spinifer Lindgren, 1897 
Halmahera for Tedania brevispiculata Thiele, 1903 
Halmahera for Tedania coralliophila Thiele, 1903 
Halmahera for Tedania maeandrica Thiele, 1903 
Halmahera for Tedania reticulata Thiele, 1903 
Indonesia for Hymeraphia distincta Thiele, 1903 
Indonesia for Microciona similis (Thiele, 1903) 
Indonesia for Rhaphidophlus coralliophilus Thiele, 1903 
Indonesian Exclusive Economic Zone for Gelliodes hamata Thiele, 1903 
Indonesian Exclusive Economic Zone for Hymeraphia similis Thiele, 1903 
Indonesian Exclusive Economic Zone for Rhaphidophlus cervicornis Thiele, 1903 
Indonesian Exclusive Economic Zone for Tedania coralliophila Thiele, 1903 

Holotype ZMB 7215, geounit Indonesian Exclusive Economic Zone, identified as Hymeraphia similis Thiele, 1903

 Identification

 for Gellius irregularis Kieschnick, 1896

According to Thiele (1903: 941) the material was not present in the Kieschnick collection from Ternate when he was ... [details]